scipy.stats.brunnermunzel#

scipy.stats.brunnermunzel(x, y, alternative='two-sided', distribution='t', nan_policy='propagate', *, axis=0, keepdims=False)[source]#

Compute the Brunner-Munzel test on samples x and y.

The Brunner-Munzel test is a nonparametric test of the null hypothesis that when values are taken one by one from each group, the probabilities of getting large values in both groups are equal. Unlike the Wilcoxon-Mann-Whitney’s U test, this does not require the assumption of equivariance of two groups. Note that this does not assume the distributions are same. This test works on two independent samples, which may have different sizes.

Parameters:

x, yarray_like

Array of samples, should be one-dimensional.

alternative{‘two-sided’, ‘less’, ‘greater’}, optional

Defines the alternative hypothesis. The following options are available (default is ‘two-sided’):

‘two-sided’

‘less’: one-sided

‘greater’: one-sided

distribution{‘t’, ‘normal’}, optional

Defines how to get the p-value. The following options are available (default is ‘t’):

‘t’: get the p-value by t-distribution

‘normal’: get the p-value by standard normal distribution.

nan_policy{‘propagate’, ‘omit’, ‘raise’}

Defines how to handle input NaNs.

propagate: if a NaN is present in the axis slice (e.g. row) along which the statistic is computed, the corresponding entry of the output will be NaN.
omit: NaNs will be omitted when performing the calculation. If insufficient data remains in the axis slice along which the statistic is computed, the corresponding entry of the output will be NaN.
raise: if a NaN is present, a ValueError will be raised.

axisint or None, default: 0

If an int, the axis of the input along which to compute the statistic. The statistic of each axis-slice (e.g. row) of the input will appear in a corresponding element of the output. If None, the input will be raveled before computing the statistic.

keepdimsbool, default: False

If this is set to True, the axes which are reduced are left in the result as dimensions with size one. With this option, the result will broadcast correctly against the input array.

Returns:

statisticfloat: The Brunner-Munzer W statistic.
pvaluefloat: p-value assuming an t distribution. One-sided or two-sided, depending on the choice of alternative and distribution.

See also

mannwhitneyu: Mann-Whitney rank test on two samples.

Notes

Brunner and Munzel recommended to estimate the p-value by t-distribution when the size of data is 50 or less. If the size is lower than 10, it would be better to use permuted Brunner Munzel test (see [2]).

Beginning in SciPy 1.9, np.matrix inputs (not recommended for new code) are converted to np.ndarray before the calculation is performed. In this case, the output will be a scalar or np.ndarray of appropriate shape rather than a 2D np.matrix. Similarly, while masked elements of masked arrays are ignored, the output will be a scalar or np.ndarray rather than a masked array with mask=False.

References

[1]

Brunner, E. and Munzel, U. “The nonparametric Benhrens-Fisher problem: Asymptotic theory and a small-sample approximation”. Biometrical Journal. Vol. 42(2000): 17-25.

[2]

Neubert, K. and Brunner, E. “A studentized permutation test for the non-parametric Behrens-Fisher problem”. Computational Statistics and Data Analysis. Vol. 51(2007): 5192-5204.

Examples

>>> from scipy import stats
>>> x1 = [1,2,1,1,1,1,1,1,1,1,2,4,1,1]
>>> x2 = [3,3,4,3,1,2,3,1,1,5,4]
>>> w, p_value = stats.brunnermunzel(x1, x2)
>>> w
3.1374674823029505
>>> p_value
0.0057862086661515377